The workflow sample, described below, allows one to extract a coverage and/or bases count from an assembly. It receives a number of assemblies and for each of them produces coverage as a tab delimited plain text file. The coverage is extracted considering a threshold value.
Workflow Sample Location
The workflow sample "Extract Coverage from Assembly" can be found in the "NGS" section of the Workflow Designer samples.
The opened workflow looks as follows:
The wizard has 3 pages.
Input assembly (-ies) Page: On this page you must input assembly(-ies).
Extract parameters Page: Here you can optionally modify extract parameters.
The following parameters are available:
Format Format to store the output. Export Data type to export. Threshold The minimum coverage value to export.
Output data Page: On this page you can select an output file: