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Extract transcript sequences from the genomic sequence(s) with gffread.

Parameters in GUI

ParameterDescriptionDefault value
Output sequencesThe url to the output file with the extracted sequences. 

Parameters in Workflow File

Type: gffread

ParameterParameter in the GUIType
url-outOutput sequences

string

Input/Output Ports

The element has 1 input port:  

Name in GUI: Input transcripts

Name in  Workflow File: in-data

Slots:

Slot In GUISlot in Workflow FileType
Genomic sequence urlgenomestring
Transcripts urltranscriptsstring

And 1 output port:

Name in GUI: Extracted sequences url

Name in Workflow File: extracted-data

Slots:

Slot In GUISlot in Workflow FileType
sequencessequencesstring
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