Builds quality control reports.
Parameters in GUI
|Output directory||Select an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file.||Input file|
|List of adapters|
Specifies a non-default file which contains the list of adapter sequences which will be explicity searched against the library. The file must contain sets of named adapters in the form name[tab]sequence. Lines prefixed with a hash will be ignored.
|List of contaminants||Specifies a non-default file which contains the list of contaminants to screen overrepresented sequences against. The file must contain sets of named contaminants in the form name[tab]sequence. Lines prefixed with a hash will be ignored.|
Parameters in Workflow File
|Parameter||Parameter in the GUI||Type|
|adapter||List of adapters||string|
|contaminants||List of contaminants||string|
The element has 1 input port:
Name in GUI: Short reads
Name in Workflow File: in-file
|Slot In GUI||Slot in Workflow File||Type|