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Parses annotations to find any IDs and fetches corresponding sequences.

Parameters in GUI

ParameterDescriptionDefault value
Save file to directoryThe directory to store sequence files loaded from a database.default
NCBI databaseThe database to read from.

nucleotide

Available values are:

  • nucleotide
  • protein

Parameters in Workflow File

Type: fetch-sequence

ParameterParameter in the GUIType
save-dirSave file to directorystring
databaseNCBI databasestring

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table

And 1 output port:

Name in GUI: Sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
Sequencesequencesequence
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