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Output a table of genes found in a reference sequence.

Parameters in GUI

ParameterDescriptionDefault value
Output fileFile to store a report. 
Annotation nameAnnotation name used to compare genes and reference genomes..blast-result
Existing fileIf a target report already exists you should specify how to handle that. Merge two table in one. Overwrite or Rename existing file..Merge
Identity cutoffIdentity between gene sequence length and annotation length in per cent. BLAST identity (if specified) is checked after90.0000%

Parameters in Workflow File

Type: genebygene-report-id

ParameterParameter in the GUIType
output-fileOutput filestring
annotation_nameAnnotation name

string

existingExisting filestring
identityIdentity cutoffnumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Gene by gene report data

Name in Workflow File: in-data

Slots:

Slot In GUISlot in Workflow FileType
Input annotationsgene-annann-table-list
Input sequencesgene-seqseq
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