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Extracts annotated regions from input sequence.

Parameters in GUI

ParameterDescriptionDefault value
TranslateTranslates the annotated regions if the corresponding annotation marks a protein subsequence.False
ComplementComplements the annotated regions if the corresponding annotation is located on the complement strand.False
Split joinedSplit joined annotations to single region annotations.False
Extend leftExtends the resulted regions to left.0
Extend rightExtends the resulted regions to right.0
Gap lengthInserts a gap of a specified length between the merged locations of the annotation.0

Parameters in Workflow File

Type: extract-annotated-sequence

ParameterParameter in the GUIType
translateTranslateboolean
complementComplementboolean
split-joined-annotationsSplit joinedboolean
extend-leftExtend leftnumeric
extend-rightExtend rightnumeric
merge-gap-lengthGap lengthnumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Set of annotationsannotationsannotation-table

And 1 output port:

Name in GUI: Annotated regions

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
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