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Adds corresponding PHRED quality scores to the sequences. Use this element to convert .fasta and .qual pair to fastq format.

Parameters in GUI

ParameterDescriptionDefault value
PHRED input (required)Path to a file with PHRED quality scores. 
Quality formatFormat to encode quality scores.Sanger

Parameters in Workflow File

Type: import-phred-qualities

ParameterParameter in the GUIType
url-inPHRED inputstring
quality-formatQuality format

string

Available values are:

  • Sanger
  • Illumina 1.3+
  • Solexa/Illumina 1.0

Input/Output Ports

The element has 1 input port:

Name in GUI: DNA sequences

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: DNA sequences with imported quailities

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

 

 

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