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Reads sequences and annotations if any from local or remote files.

Parameters in GUI

ParameterDescriptionDefault value
Input files Semicolon-separated list of datasets to the input files. 
ModeIf the file contains more than one sequence, “split” mode sends them as is to output, while “merge” appends all the sequences and outputs the merged sequence.Split
Merging gapIn the “merge” mode, inserts the specified number of gaps between the original sequences. This is helpful e.g. to avoid finding false positives at the merge boundaries.10
Sequence count limit

Split mode only. Read only first N sequences from each file. Set 0 value for reading all sequences.

0
Accession filterOnly reports a sequence with the specified accession (id). 

Parameters in Workflow File

Type: read-sequence

ParameterParameter in the GUIType
url-inInput filesstring
modeMode

numeric

Available values are:

  • 0 - for split mode
  • 1 - for merge mode
merge-gapMerging gapnumeric
sequence-count-limitSequence count limitnumeric
accept-accessionAccession filterstring

Input/Output Ports

The element has 1 output port:

Name in GUI: Sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Set of annotationsannotationsannotation-table
Source URLurlstring
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