The Secondary Structure Prediction plugin provides a set of algorithms for the protein secondary structure (alpha-helix, beta-sheet) prediction from a raw sequence.
Currently, available algorithms are:
GORIV Jean Garnier, Jean-Francois Gibrat, and Barry Robson,”GOR Method for Predicting Protein Secondary Structure from Amino Acid Sequence”, in Methods in Enzymology, vol.266, pp. 540 - 553, (1996).
Improved The improved version of the GOR method in J. Garnier, D. Osguthorpe, and B. Robson, J. Mol. Biol., vol. 120, p. 97 (1978).
PsiPred Bryson K, McGuffin LJ, Marsden RL, Ward JJ, Sodhi JS. & Jones DT. (2005) Protein structure prediction servers at University College London. Nucl. Acids Res. 33(Web Server issue): W36-38.
Jones DT. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292: 195-202.
<center> <br> <img src="/wiki/download/attachments/1975967821433381/Secondary Structure Prediction.png"/> <br> </center>
Range start / Range end — select the sequence range for prediction.
Results — the visual representation of the prediction results, for example: