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Output file

Specify the output text file name.

All taxa

By default, taxa with no sequences (reads or scaffoldscontigs) assigned are not included into the output. This option specifies to include all taxa.

This may be useful when an output from several samples is compared. Set "Sort by" to "Tax ID" in this case.

Sort by

It is possible to sort rows in the output file in two ways:

  • by the number of reads, covered by the clade rooted at the taxon(i.e. "clade_num" for this taxID)
  • by taxIDs

The second option may be useful when an output from different samples is compared.

Tax ID

Parameters in Workflow File