This workflow allows to add PHRED quality scores to the sequence and save output to Fastq. For example, one can read a Fasta file, import PHRED quality values from corresponding qualities file and export the result to Fastq.
Workflow Sample Location
The workflow sample "Convert "seq/qual" Pair to FASTQ" can be found in the "Conversions" section of the Workflow Designer samples.
The workflow looks as follows:
The wizard has 2 pages.
Input Sequence(s): On this page you must input sequences(s).
Convert "seq/qual" Pair to FASTQ: On this page you can modify converting and output settings.
The following parameters are available:
PHRED input Path to file with PHRED quality scores. Quality type Choose method to encode quality scores. File format Quality values can be in specialized FASTA-like PHRED qual format or encoded similar as in FASTQ files. Result file Location of output data file. If this attribute is set, slot "Location" in port will not be used. Accumulate results Accumulate all incoming data in one file or create separate files for each input.In the latter case, an incremental numerical suffix is added to the file name.